Friday, December 3, 2010

Specific Gene Thought to Determine Athletic Ability

Two separate research teams have identified the myostatin gene as a crucial indicator of athletic ability in a Thoroughbred's genetic makeup and are continuing to study the potential of this marker for race distance selection.

Emmeline Hill, PhD, and a team of researchers from the University College Dublin discovered earlier this year that a mutation of the gene myostatin greatly impacts a racehorse's athletic ability. Hill's team discovered that horses with the particular mutation have increased muscle mass.

The team used the Equinome Speed Gene test to analyze the DNA of nearly 150 Thoroughbreds. The results of the test indicated at what distance--short, medium, or medium-long races--a horse would likely be most competitive. Since the initial study, the team has determined that the Equinome Speed Gene marker is the most sensitive genetic marker in the genome for the prediction of race distance aptitude in Thoroughbreds.

More recently, a team of researchers working at the Japanese Laboratory of Racing Chemistry conducted a similar test and obtained comparable results. Teruaki Tozaki, PhD, the leader of the Japanese team, also found that the characteristics of the area surrounding the myostatin gene had a great bearing on the athletic ability of the horses tested, suggesting that racing performance or athletic ability is a hereditary trait.

More specifically, the researchers found that three genetic markers on Chromosome-18--where the myostatin gene is located--had a positive correlation with performance, based on a review of lifetime earnings and performance rankings from the Japanese Racing Association (JRA).

"It is expected that the three genetic markers may be included as genetic diagnostic markers for racing performance measures," Tozaki said. "Importantly, our study supports the research by University College Dublin's Dr. Emmeline Hill published earlier this year that identified a genetic marker in myostatin as a predictor of best race distance."

Hill added, “The markers may be indicators of performance in the JRA system, as there is early selection for certain distance types, which has contributed to Dr. Tozaki's findings”.

"The ongoing, rapid developments in genomics technology are facilitating the identification of the key genetic variants that contribute to the athletic phenotype (physical characteristics)," said Hill of Tozaki's research. "Importantly, we have confirmed the importance of the Equinome Speed Gene test marker in the context of the entire genome and have shown that the genetic marker used in our test is 15 times more powerful in determining optimum racing distance than the next most sensitive marker."

A complete overview of the studies can be found at the University College Dublin's website.

(Originally posted November 27, 2010 on www.thehorse.com)

Wednesday, October 27, 2010

Genetic Research is a New Tool in Breeding

The quest to breed a better horse has led Thoroughbred breeders to try many unorthodox theories and systems, all with mixed results.

To date, the success (or lack thereof) of most of these tools has been anecdotal, with no way to quantify whether a horse's achievements were due to one or more of these breeding aides. Now, thanks to the rapidly developing advances within DNA collection and testing, the quest for a better-bred Thoroughbred is becoming more scientific than theoretical in nature.

That was the focus of the first Thoroughbred Pedigree and Genetics Symposium in Lexington, Ky., on Oct. 11, as about 175 industry professionals heard presentations from some of the leaders in the field of equine genetics research. The seminar was presented by The Blood-Horse and the Pedigree Consultants firm of Alan Porter and Byron Rogers.

Much of the groundwork for current advances within equine DNA traces back to the Equine Genome Project, a cooperative effort in more than 20 countries that set out to define the genome--the DNA sequence--of the domestic horse. The genome is the total amount of genetic information in the horse's 64 chromosomes.

Studying DNA through various "markers" enables scientists to identify genes that combine to produce certain traits within the horse, including whether the horse is predisposed to speed or distance. In addition, DNA study can be useful in helping researchers find new therapies and treatments for diseases.

During the Pedigree and Genetics Symposium, participants were dealt a heavy dose of highly technical but fascinating material on the potential benefits to the breed from DNA study. A DVD containing all of the symposium's presentations will be released later.

However, most of the presenters emphasized that even with the sophisticated information gleaned from analyzing a horse's genome, it is not ironclad and should be used to complement other breeding tools.

In his review of the history of pedigree analysis and other breeding tools, Porter noted that there is now greater access to information that once was time-consuming and costly to obtain. Among the major developments within Thoroughbred pedigree research are programs that analyze nicking patterns within a horse's pedigree, such as the TrueNicks product developed by Porter and Rogers.

"The developments probably raise as many questions as they answer," Porter said. He said the industry is "at a point now where everybody has access to information; what is important is how to interpret that information."

Even with all the developments currently underway, Porter said there is no assurance that use of this information will lead to better bred horses.

"Is this going to allow us to breed a faster or better horse? That's a very good question," Porter said. "In terms of whether we are going to improve the ability of the upper end of the breed, under the current best practices in breeding, I think it is highly unlikely. Personally, I would hypothesize the horse reached the upper end of its evolution as a runner somewhere around 40 years ago.

"The goal of breeding a Thoroughbred has always been to breed the best possible horse," Porter continued. "I think we are not so much trying to buy or breed a superhorse, although that may still be possible, but more using our skills and our technology to breed or buy horses that don't have the potential to be elite athletes."

James MacLeod, VMD, PhD, John S. and Elizabeth A. Knight Chair, professor of Veterinary Science at the Gluck Equine Research Center at the University of Kentucky, explained how the Equine Genome Project was undertaken, some of the tools used in genetic research, and how its results can be applied.

"These are powerful new tools that will enhance and enable good horsemanship," MacLeod said.

In a major genetic research breakthrough announced at the symposium, Emmeline Hill, PhD, equine genomics researcher at the University College Dublin School of Agriculture, Food Science, and Veterinary Medicine, reported that a scientific study has confirmed the "genetic marker used in the Equinome Speed Gene Test to identify the optimum racing distance for individual Thoroughbred horses is the most powerful indicator of its type."

Hill, a co-founder and chairman of Equinome, a genetics company based in Ireland, said her company's genetic marker "performs 15 times better than any other marker in predicting best racing distance."

Steven Tammariello, PhD, associate professor at Binghamton University, and founder of ThoroughGen, delivered a detailed explanation of using genetic testing in the area of molecular physiology in both humans and horses.

He explained that early DNA sequencing was performed in an effort to "come up with a genetically superior horse." Now, however, he said it had evolved to where "we are interested more in what you want to avoid."

Matthew Binns, PhD, a consultant for Equigen LLC and The Genetic Edge, explained how his research found markers with predictive value for preferred distances, preferred surfaces, and racing ability.

He said his study was conducted on the genome of more than 1,000 horses, including 200 grade I winners.

"Our data predicts that you can eliminate 50% of individuals on a short list and retain 75% of the graded stakes winners," Binn said of his conclusions.

Binns said that using only his DNA tests he was able pick six graded stakes winners from a group of 55 horses.

Robert Fierro of Datatrack International, outlined trends within North American breeding that have changed horse biomechanics over the decades to meet changes within the international racing industry. Using a chart, Fierro showed how some leading sires compared when looking at their power and stride attributes.

(Originally posted on BloodHorse.com.)

Thursday, February 18, 2010

Speed Gene identified

Since the horse genome sequence became available in 2007, many of the genes contributing to the elite athletic physiology and physique of the horse have been identified: these include genes responsible for insulin signalling, metabolism of fats and muscle strength.

The genome is the complete complement of genetic material within an individual and carries the instructions for building and maintaining a living organism. The genetic material, known as DNA, is made up of the letters G, A, T and C. Various combinations of these letters make up the 3 billion letters of the genetic code. Approximately 25,000 genes are found within the genome, each gene spelling out the recipe for a particular protein. Proteins are the building blocks of cells and are the physical representation of the genetic information encoded in the DNA of the genome.

Research conducted at University College Dublin has developed technology that can be used to predict best race distance for an individual horse.

In a gene responsible for muscle mass development, a specific position in the genetic code can contain either the letter C or the letter T. As each individual has two copies of the gene—one inherited from the dam, one from the sire—there are three possible combinations of the letters: C:C, C:T or T:T.

The success of a racehorse depends on a combination of inherited characteristics (genes) and environmental influences including management and training. Pedigree studies have demonstrated that more than 35 percent of the variation in racecourse performance is due to inherited characteristics. In a situation where individuals are cared for and trained in the same way, the genetic contribution to racing performance will be considerably more important. In other words, all other things being equal, the main differences between two individuals in a yard will be in the genes.

The work, led by Dr Emmeline Hill at University College Dublin, was published January 20, 2010 in the Public Library of Science Journal, PLoS ONE.

For more details see:
Hill EW, Gu J, Eivers SS, Fonseca RG, McGivney BA, et al. (2010) A Sequence Polymorphism in MSTN Predicts Sprinting Ability and Racing Stamina in Thoroughbred Horses.
PLoS ONE 5(1): e8645. doi:10.1371/journal.pone.0008645